Annotation of co-expression genes

PH01000040G0790's details annotation

1.Annotation

ICBR annotation: glycine-rich RNA-binding protein 7, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000040
Strand: +

RegionStartEnd
gene536852539999
mRNA536852539999
exon536852538032
exon538264538325
exon538470539999
CDS537711538032
CDS538264538325
CDS538470538970

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000341exosome_(RNase_complex)
COP9_signalosome
coexpression networkCFinderM001517N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_11038
PF00076.21RRM_1118169
PF00098.22zf-CCHC222237

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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