PH01000040G1590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G16810 : 1.90E-74
Blast annotation: pumilio 24
2.Location
Scaffold: PH01000040
Strand: +
| Region | Start | End |
| gene | 1055964 | 1064657 |
| mRNA | 1055964 | 1064657 |
| exon | 1055964 | 1056318 |
| exon | 1056422 | 1056475 |
| exon | 1056913 | 1056974 |
| exon | 1057053 | 1057134 |
| exon | 1057344 | 1057405 |
| exon | 1057484 | 1057565 |
| exon | 1057659 | 1057782 |
| exon | 1057888 | 1057971 |
| exon | 1058151 | 1058265 |
| exon | 1058446 | 1058596 |
| exon | 1058710 | 1058922 |
| exon | 1059232 | 1059303 |
| exon | 1059477 | 1059527 |
| exon | 1059782 | 1059859 |
| exon | 1059973 | 1060185 |
| exon | 1060495 | 1060566 |
| exon | 1060889 | 1060939 |
| exon | 1061213 | 1061263 |
| exon | 1061338 | 1061388 |
| exon | 1061655 | 1061819 |
| exon | 1062456 | 1062530 |
| exon | 1063071 | 1063309 |
| exon | 1063566 | 1064657 |
| CDS | 1056118 | 1056318 |
| CDS | 1056422 | 1056475 |
| CDS | 1056913 | 1056974 |
| CDS | 1057053 | 1057134 |
| CDS | 1057344 | 1057405 |
| CDS | 1057484 | 1057565 |
| CDS | 1057659 | 1057782 |
| CDS | 1057888 | 1057971 |
| CDS | 1058151 | 1058265 |
| CDS | 1058446 | 1058596 |
| CDS | 1058710 | 1058922 |
| CDS | 1059232 | 1059303 |
| CDS | 1059477 | 1059527 |
| CDS | 1059782 | 1059859 |
| CDS | 1059973 | 1060185 |
| CDS | 1060495 | 1060566 |
| CDS | 1060889 | 1060939 |
| CDS | 1061213 | 1061263 |
| CDS | 1061338 | 1061388 |
| CDS | 1061655 | 1061819 |
| CDS | 1062456 | 1062530 |
| CDS | 1063071 | 1063309 |
| CDS | 1063566 | 1063695 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08144.10 | CPL | 653 | 756 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.