Annotation of co-expression genes

PH01000040G1880's details annotation

1.Annotation

ICBR annotation: DEAD-box ATP-dependent RNA helicase 3, putative, expressed

Blast result AT5G26742 : 0.00E+00
Blast annotation: DEAD box RNA helicase (RH3)

2.Location

Scaffold: PH01000040
Strand: -

RegionStartEnd
gene11985881207810
mRNA11985881207810
exon11985881199093
exon12002461200319
exon12004311200598
exon12008611200932
exon12015231201881
exon12022921202387
exon12029701203113
exon12034471203824
exon12040161204240
exon12047951204893
exon12060311206442
exon12065391206672
exon12073841207810
CDS11990291199093
CDS12002461200319
CDS12004311200598
CDS12008611200932
CDS12015231201881
CDS12022921202387
CDS12029701203113
CDS12034471203824
CDS12040161204240
CDS12047951204893
CDS12060311206442
CDS12065391206672
CDS12073841207767

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00270.28DEAD125296
PF00271.30Helicase_C334442
PF08152.11GUCT529629
PF00098.22zf-CCHC751767

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0005634nucleus
GO:0008026ATP-dependent helicase activity
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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