Annotation of co-expression genes

PH01000040G2030's details annotation

1.Annotation

ICBR annotation: anthranilate synthase component I-1, chloroplast precursor, putative, expressed

Blast result AT2G29690 : 0.00E+00
Blast annotation: anthranilate synthase 2

2.Location

Scaffold: PH01000040
Strand: +

RegionStartEnd
gene13207311327216
mRNA13207311327216
exon13207311320942
exon13210291321222
exon13225641322753
exon13232431323394
exon13239991324114
exon13242161324462
exon13245601324616
exon13252861325438
exon13260721326152
exon13264021326488
exon13268011327216
CDS13208161320942
CDS13210291321222
CDS13225641322753
CDS13232431323394
CDS13239991324114
CDS13242161324462
CDS13245601324616
CDS13252861325438
CDS13260721326152
CDS13264021326488
CDS13268011327124

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04715.12Anth_synt_I_N71224
PF00425.17Chorismate_bind286557

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
418 Phenylalanine, tyrosine and tryptophan biosynthesisanthranilate synthase component I [EC:4.1.3.27]K01657

10.Gene Ontology

GO AccessionGO Annotation
GO:0000162tryptophan biosynthetic process
GO:0004049anthranilate synthase activity
GO:0009058biosynthetic process
GO:0016833oxo-acid-lyase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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