PH01000040G2330's details annotation
1.Annotation
ICBR annotation: dolichyl-phosphate beta-glycosyltransferase, putative, expressed
Blast result AT1G20575 : 4.00E-116
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000040
Strand: -
| Region | Start | End |
| gene | 1505497 | 1509277 |
| mRNA | 1505497 | 1509277 |
| exon | 1505497 | 1506282 |
| exon | 1506374 | 1506488 |
| exon | 1506561 | 1506683 |
| exon | 1507110 | 1507135 |
| exon | 1507541 | 1507762 |
| exon | 1508022 | 1508102 |
| exon | 1508134 | 1508161 |
| exon | 1508873 | 1509277 |
| CDS | 1506178 | 1506282 |
| CDS | 1506374 | 1506488 |
| CDS | 1506561 | 1506683 |
| CDS | 1507110 | 1507135 |
| CDS | 1507541 | 1507762 |
| CDS | 1508022 | 1508102 |
| CDS | 1508134 | 1508161 |
| CDS | 1508873 | 1508994 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00535.25 | Glycos_transf_2 | 17 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | dolichol-phosphate mannosyltransferase [EC:2.4.1.83] | ko00510 | K00721 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.