PH01000041G0700's details annotation
1.Annotation
ICBR annotation: CAF1 family ribonuclease containing protein, putative, expressed
Blast result AT1G55870 : 1.00E-137
Blast annotation: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
2.Location
Scaffold: PH01000041
Strand: -
| Region | Start | End |
| gene | 457174 | 462624 |
| mRNA | 457174 | 462624 |
| exon | 457174 | 458436 |
| exon | 458633 | 458897 |
| exon | 459120 | 459246 |
| exon | 459552 | 459665 |
| exon | 460061 | 460370 |
| exon | 461615 | 462624 |
| CDS | 457611 | 458436 |
| CDS | 458633 | 458897 |
| CDS | 459120 | 459246 |
| CDS | 459552 | 459665 |
| CDS | 460061 | 460370 |
| CDS | 461615 | 461916 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04857.19 | CAF1 | 19 | 396 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | poly(A)-specific ribonuclease [EC:3.1.13.4] | ko03018 | K01148 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.