PH01000041G0930's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G03810 : 5.90E-25
Blast annotation: 18S pre-ribosomal assembly protein gar2-related
2.Location
Scaffold: PH01000041
Strand: +
| Region | Start | End |
| gene | 607052 | 611342 |
| mRNA | 607052 | 611342 |
| exon | 607052 | 607160 |
| exon | 607234 | 607252 |
| exon | 608450 | 609150 |
| exon | 609483 | 610522 |
| exon | 610798 | 611342 |
| CDS | 607158 | 607160 |
| CDS | 607234 | 607252 |
| CDS | 608450 | 609150 |
| CDS | 609483 | 610522 |
| CDS | 610798 | 610906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001314 | RLK-Pelle_LRR-I-1 (from iTAK) Tryptophan_metabolism Lysine_degradation Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, tricarboxylic acid cycle, SRP-dependent cotranslational protein targeting to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.