PH01000042G2220's details annotation
1.Annotation
ICBR annotation: vacuolar-processing enzyme precursor, putative, expressed
Blast result AT1G62710 : 1.50E-62
Blast annotation: beta vacuolar processing enzyme
2.Location
Scaffold: PH01000042
Strand: +
| Region | Start | End |
| gene | 1415716 | 1420671 |
| mRNA | 1415716 | 1420671 |
| exon | 1415716 | 1416842 |
| exon | 1418751 | 1418892 |
| exon | 1419383 | 1419547 |
| exon | 1419736 | 1419822 |
| exon | 1420137 | 1420336 |
| exon | 1420649 | 1420671 |
| CDS | 1416643 | 1416842 |
| CDS | 1418751 | 1418892 |
| CDS | 1419383 | 1419547 |
| CDS | 1419736 | 1419822 |
| CDS | 1420137 | 1420336 |
| CDS | 1420649 | 1420658 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01650.17 | Peptidase_C13 | 114 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004197 | cysteine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.