Annotation of co-expression genes

PH01000042G2310's details annotation

1.Annotation

ICBR annotation: CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed

Blast result AT5G19010 : 0.00E+00
Blast annotation: mitogen-activated protein kinase 16

2.Location

Scaffold: PH01000042
Strand: -

RegionStartEnd
gene14787611487838
mRNA14787611487838
exon14787611479970
exon14800691480208
exon14803021480403
exon14807621480973
exon14810971481252
exon14813371481486
exon14826771482736
exon14828231482950
exon14841691484577
exon14862501486411
exon14875281487595
exon14877311487838
CDS14796931479970
CDS14800691480208
CDS14803021480403
CDS14807621480973
CDS14810971481252
CDS14813371481486
CDS14826771482736
CDS14828231482950
CDS14841691484577
CDS14862501486411
CDS14875281487595
CDS14877311487734

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase95386

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004707MAP kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.