PH01000043G0070's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G30710 : 1.70E-67
Blast annotation: Family of unknown function (DUF566)
2.Location
Scaffold: PH01000043
Strand: -
| Region | Start | End |
| gene | 68085 | 78274 |
| mRNA | 68085 | 78274 |
| exon | 68085 | 69478 |
| exon | 69564 | 69674 |
| exon | 69870 | 69959 |
| exon | 72653 | 72742 |
| exon | 72845 | 72961 |
| exon | 73794 | 73913 |
| exon | 74388 | 78274 |
| CDS | 69338 | 69478 |
| CDS | 69564 | 69674 |
| CDS | 69870 | 69959 |
| CDS | 72653 | 72742 |
| CDS | 72845 | 72961 |
| CDS | 73794 | 73913 |
| CDS | 74388 | 75647 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000751 | Cutin,_suberine_and_wax_biosynthesis Peroxisome fatty-acyl-CoA_reductase_(alcohol-forming)_activity MYB Transcription_Regulator(from PlantTFDB) lipid biosynthetic process, metabolic process, fatty acid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04484.11 | QWRF | 226 | 529 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.