PH01000043G0170's details annotation
1.Annotation
ICBR annotation: EF hand family protein, putative, expressed
Blast result AT3G18430 : 6.00E-52
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01000043
Strand: +
| Region | Start | End |
| gene | 132216 | 134053 |
| mRNA | 132216 | 134053 |
| exon | 132216 | 133150 |
| exon | 133248 | 133372 |
| exon | 133632 | 133779 |
| exon | 133876 | 134053 |
| CDS | 133081 | 133150 |
| CDS | 133248 | 133372 |
| CDS | 133632 | 133779 |
| CDS | 133876 | 133997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001731 | Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 32 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.