Annotation of co-expression genes

PH01000043G0510's details annotation

1.Annotation

ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed

Blast result AT1G65650 : 3.00E-116
Blast annotation: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

2.Location

Scaffold: PH01000043
Strand: -

RegionStartEnd
gene360421365035
mRNA360421365035
exon360421361810
exon361897361999
exon362087362133
exon363451363497
exon364236365035
CDS361049361810
CDS361897361999
CDS362087362133
CDS363451363497
CDS364236364266

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000136CPP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01088.20Peptidase_C123203

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004221ubiquitin thiolesterase activity
GO:0005622intracellular
GO:0006511ubiquitin-dependent protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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