PH01000043G1720's details annotation
1.Annotation
ICBR annotation: homeobox protein knotted-1, putative, expressed
Blast result AT5G25220 : 2.40E-62
Blast annotation: KNOTTED1-like homeobox gene 3
2.Location
Scaffold: PH01000043
Strand: +
| Region | Start | End |
| gene | 1216422 | 1222874 |
| mRNA | 1216422 | 1222874 |
| exon | 1216422 | 1218477 |
| exon | 1219450 | 1219509 |
| exon | 1221362 | 1221552 |
| exon | 1221630 | 1221761 |
| exon | 1221851 | 1221984 |
| exon | 1222156 | 1222874 |
| CDS | 1218438 | 1218477 |
| CDS | 1219450 | 1219509 |
| CDS | 1221362 | 1221552 |
| CDS | 1221630 | 1221761 |
| CDS | 1221851 | 1221984 |
| CDS | 1222156 | 1222240 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001301 | TALE Transcription_Regulator(from PlantTFDB) SBP Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) glycogen biosynthetic process, regulation of actin filament polymerization, cytoskeleton, |
| coexpression network | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation metabolic process, branched chain family amino acid metabolic process, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity branched-chain-amino-acid transaminase activity, transferase activity, transferring pentosyl groups, steroid biosynthetic process, histidine biosynthetic process, HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Histidine_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) sterol_24-C-methyltransferase_activity 5S rRNA binding, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis Steroid_biosynthesis steroid biosynthetic process, branched chain family amino acid metabolic process, ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03789.12 | ELK | 90 | 111 |
| PF05920.10 | Homeobox_KN | 130 | 169 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.