PH01000043G1890's details annotation
1.Annotation
ICBR annotation: CUE domain containing protein, expressed
Blast result AT5G32440 : 2.00E-49
Blast annotation: Ubiquitin system component Cue protein
2.Location
Scaffold: PH01000043
Strand: +
| Region | Start | End |
| gene | 1372987 | 1377817 |
| mRNA | 1372987 | 1377817 |
| exon | 1372987 | 1374132 |
| exon | 1374984 | 1375143 |
| exon | 1375616 | 1375766 |
| exon | 1376490 | 1376716 |
| exon | 1376814 | 1376987 |
| exon | 1377082 | 1377817 |
| CDS | 1374107 | 1374132 |
| CDS | 1374984 | 1375143 |
| CDS | 1375616 | 1375766 |
| CDS | 1376490 | 1376716 |
| CDS | 1376814 | 1376987 |
| CDS | 1377082 | 1377168 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001446 | RLK-Pelle_LRR-III (from iTAK) membrane, ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.