PH01000044G0540's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT4G30080 : 8.30E-60
Blast annotation: auxin response factor 16
2.Location
Scaffold: PH01000044
Strand: +
| Region | Start | End |
| gene | 419467 | 424036 |
| mRNA | 419467 | 424036 |
| exon | 419467 | 419758 |
| exon | 420074 | 420676 |
| exon | 423203 | 424036 |
| CDS | 419666 | 419758 |
| CDS | 420074 | 420676 |
| CDS | 423203 | 423826 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR160a | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 30 | 126 |
| PF06507.12 | Auxin_resp | 154 | 230 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.