PH01000044G1140's details annotation
1.Annotation
ICBR annotation: regulator of chromosome condensation, putative, expressed
Blast result AT1G76950 : 0.00E+00
Blast annotation: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
2.Location
Scaffold: PH01000044
Strand: +
| Region | Start | End |
| gene | 827000 | 838516 |
| mRNA | 827000 | 838516 |
| exon | 827000 | 828201 |
| exon | 828841 | 828905 |
| exon | 829171 | 829257 |
| exon | 829599 | 829688 |
| exon | 829761 | 829847 |
| exon | 829936 | 830061 |
| exon | 833771 | 835765 |
| exon | 835852 | 835998 |
| exon | 836818 | 837335 |
| exon | 837413 | 838516 |
| CDS | 827760 | 828201 |
| CDS | 828841 | 828905 |
| CDS | 829171 | 829257 |
| CDS | 829599 | 829688 |
| CDS | 829761 | 829847 |
| CDS | 829936 | 830061 |
| CDS | 833771 | 835765 |
| CDS | 835852 | 835998 |
| CDS | 836818 | 837335 |
| CDS | 837413 | 837530 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16457.4 | PH_12 | 172 | 276 |
| PF00415.17 | RCC1 | 443 | 490 |
| PF00415.17 | RCC1 | 494 | 545 |
| PF00415.17 | RCC1 | 548 | 597 |
| PF00415.17 | RCC1 | 609 | 656 |
| PF00415.17 | RCC1 | 661 | 710 |
| PF00415.17 | RCC1 | 714 | 762 |
| PF01363.20 | FYVE | 766 | 832 |
| PF13713.5 | BRX_N | 995 | 1030 |
| PF08381.10 | BRX | 1155 | 1210 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.