Annotation of co-expression genes

PH01000044G1560's details annotation

1.Annotation

ICBR annotation: protein kinase family protein, putative, expressed

Blast result AT1G63500 : 4.00E-112
Blast annotation: Protein kinase protein with tetratricopeptide repeat domain

2.Location

Scaffold: PH01000044
Strand: -

RegionStartEnd
gene11246441131791
mRNA11246441131791
exon11246441124781
exon11248131124977
exon11253051125493
exon11264551126833
exon11269141127046
exon11271491127374
exon11278891127974
exon11287081128813
exon11288931129026
exon11296151129750
exon11307241130944
exon11314001131791
CDS11247401124781
CDS11248131124977
CDS11253051125493
CDS11264551126833
CDS11269141127046
CDS11271491127374
CDS11278891127974
CDS11287081128813
CDS11288931129026
CDS11296151129750
CDS11307241130944
CDS11314001131484

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr74250

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.