Annotation of co-expression genes

PH01000044G1720's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G63430 : 3.00E-174
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000044
Strand: -

RegionStartEnd
gene12425261252753
mRNA12425261252753
exon12425261244032
exon12471851247472
exon12476121247769
exon12478641247996
exon12480691248274
exon12483641248600
exon12496071249677
exon12497611249868
exon12503471250421
exon12505271250670
exon12507531250824
exon12512481251386
exon12519081252753
CDS12437871244032
CDS12471851247472
CDS12476121247769
CDS12478641247996
CDS12480691248274
CDS12483641248600
CDS12496071249677
CDS12497611249868
CDS12503471250421
CDS12505271250670
CDS12507531250824
CDS12512481251386
CDS12519081252010

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23372
PF07714.16Pkinase_Tyr341457

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.