PH01000044G2020's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT3G15380 : 0.00E+00
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01000044
Strand: +
| Region | Start | End |
| gene | 1470001 | 1477510 |
| mRNA | 1470001 | 1477510 |
| exon | 1470001 | 1470884 |
| exon | 1472158 | 1472516 |
| exon | 1472652 | 1472797 |
| exon | 1472957 | 1472989 |
| exon | 1473144 | 1473327 |
| exon | 1473461 | 1473534 |
| exon | 1473609 | 1473722 |
| exon | 1473776 | 1473823 |
| exon | 1475611 | 1475967 |
| exon | 1476065 | 1476325 |
| exon | 1476735 | 1476863 |
| exon | 1477060 | 1477510 |
| CDS | 1470682 | 1470884 |
| CDS | 1472158 | 1472516 |
| CDS | 1472652 | 1472797 |
| CDS | 1472957 | 1472989 |
| CDS | 1473144 | 1473327 |
| CDS | 1473461 | 1473534 |
| CDS | 1473609 | 1473722 |
| CDS | 1473776 | 1473823 |
| CDS | 1475611 | 1475967 |
| CDS | 1476065 | 1476325 |
| CDS | 1476735 | 1476863 |
| CDS | 1477060 | 1477251 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001687 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 344 | 643 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.