Annotation of co-expression genes

PH01000044G2040's details annotation

1.Annotation

ICBR annotation: MLO domain containing protein, putative, expressed

Blast result AT1G26700 : 9.00E-159
Blast annotation: Seven transmembrane MLO family protein

2.Location

Scaffold: PH01000044
Strand: -

RegionStartEnd
gene14787321487361
mRNA14787321487361
exon14787321479330
exon14795541479614
exon14797241479791
exon14800411480205
exon14803071480347
exon14804331480482
exon14806081480693
exon14809201480994
exon14811281481222
exon14822541482314
exon14828661482982
exon14831111483319
exon14834471483504
exon14845331487361
CDS14788511479330
CDS14795541479614
CDS14797241479791
CDS14800411480205
CDS14803071480347
CDS14804331480482
CDS14806081480693
CDS14809201480994
CDS14811281481222
CDS14822541482314
CDS14828661482982
CDS14831111483319
CDS14834471483504
CDS14845331484694

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03094.14Mlo21454

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008219cell death
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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