PH01000045G0080's details annotation
1.Annotation
ICBR annotation: DELLA protein SLR1, putative, expressed
Blast result AT1G63100 : 4.00E-115
Blast annotation: GRAS family transcription factor
2.Location
Scaffold: PH01000045
Strand: +
| Region | Start | End |
| gene | 62696 | 66117 |
| mRNA | 62696 | 66117 |
| exon | 62696 | 66117 |
| CDS | 64186 | 66000 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000261 | protein_heterodimerization_activity NF-YB Transcription_Regulator(from PlantTFDB) nucleosome assembly, GRAS Transcription_Regulator(from PlantTFDB) nucleosome, Base_excision_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRAS |
| Transcription_Regulator(from PlantTFDB) | GRAS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03514.13 | GRAS | 211 | 581 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.