Annotation of co-expression genes

PH01000045G1260's details annotation

1.Annotation

ICBR annotation: syntaxin, putative, expressed

Blast result AT4G02195 : 1.30E-31
Blast annotation: syntaxin of plants 42

2.Location

Scaffold: PH01000045
Strand: +

RegionStartEnd
gene840521843762
mRNA840521843762
exon840521840742
exon841218841295
exon841422841487
exon841582841662
exon842393843762
CDS840671840742
CDS841218841295
CDS841422841487
CDS841582841662
CDS842393842500

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001518SNARE_interactions_in_vesicular_transport
protein phosphatase type 2A complex,
SNAP receptor activity,
protein phosphatase type 2A regulator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05739.18SNARE74126

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SNARE interactions in vesicular transportsyntaxin 16ko04130K08489

10.Gene Ontology

GO AccessionGO Annotation
GO:0005484SNAP receptor activity
GO:0005515protein binding
GO:0006886intracellular protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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