PH01000045G2030's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000045
Strand: -
| Region | Start | End |
| gene | 1338515 | 1351169 |
| mRNA | 1338515 | 1351169 |
| exon | 1338515 | 1339986 |
| exon | 1340299 | 1340528 |
| exon | 1341070 | 1341214 |
| exon | 1342075 | 1342158 |
| exon | 1343593 | 1343684 |
| exon | 1344050 | 1344096 |
| exon | 1345936 | 1345989 |
| exon | 1346586 | 1346668 |
| exon | 1347632 | 1348021 |
| exon | 1348121 | 1348741 |
| exon | 1349948 | 1351169 |
| CDS | 1339933 | 1339986 |
| CDS | 1340299 | 1340528 |
| CDS | 1341070 | 1341214 |
| CDS | 1342075 | 1342158 |
| CDS | 1343593 | 1343684 |
| CDS | 1344050 | 1344096 |
| CDS | 1345936 | 1345989 |
| CDS | 1346586 | 1346668 |
| CDS | 1347632 | 1348021 |
| CDS | 1348121 | 1348741 |
| CDS | 1349948 | 1350238 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000965 | YABBY Transcription_Regulator(from PlantTFDB) C2C2-YABBY Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001033 | Arachidonic_acid_metabolism Linoleic_acid_metabolism electron carrier activity, iron ion binding, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, galactosyltransferase activity, bHLH Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 275 | 321 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.