PH01000046G0010's details annotation
1.Annotation
ICBR annotation: protein of unknown function DUF1421 domain containing protein, expressed
Blast result AT4G28300 : 1.20E-31
Blast annotation: Protein of unknown function (DUF1421)
2.Location
Scaffold: PH01000046
Strand: +
| Region | Start | End |
| gene | 10266 | 15648 |
| mRNA | 10266 | 15648 |
| exon | 10266 | 10779 |
| exon | 11728 | 12003 |
| exon | 13875 | 15648 |
| CDS | 10678 | 10779 |
| CDS | 11728 | 12003 |
| CDS | 13875 | 15122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000554 | EIL Transcription_Regulator(from PlantTFDB) GT20 GlycosylTransferases STE_STE11 (from iTAK) PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07223.10 | DUF1421 | 489 | 531 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.