Annotation of co-expression genes

PH01000046G0140's details annotation

1.Annotation

ICBR annotation: DDT, putative, expressed

Blast result AT5G44180 : 0.00E+00
Blast annotation: Homeodomain-like transcriptional regulator

2.Location

Scaffold: PH01000046
Strand: -

RegionStartEnd
gene92369105731
mRNA92369105731
exon9236994111
exon9429394556
exon9513495217
exon9529995922
exon9619496217
exon9683897386
exon9745598162
exon9825798466
exon9949199646
exon9976499916
exon100367100453
exon100808100908
exon101624101846
exon101937102101
exon102175102267
exon102361102861
exon104364104440
exon104815105309
exon105431105731
CDS9331794111
CDS9429394556
CDS9513495217
CDS9529995922
CDS9619496217
CDS9683897386
CDS9745598162
CDS9825798466
CDS9949199646
CDS9976499916
CDS100367100453
CDS100808100908
CDS101624101846
CDS101937102101
CDS102175102267
CDS102361102861
CDS104364104440
CDS104815105309
CDS105431105614

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000623intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001173HB-other Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001199proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
CMGC_CDK-PITSLRE (from iTAK)
HB-other Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
tricarboxylic acid cycle,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Pyruvate_metabolism
Carbon_fixation_pathways_in_prokaryotes
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
coexpression networkCFinderM001569Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-other
Transcription_Regulator(from PlantTFDB)HB-other

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00046.28Homeobox4498
PF02791.16DDT607661
PF05066.12HARE-HTH787854
PF15612.5WHIM110091051
PF15613.5WSD11881268

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.