PH01000046G0170's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT5G46070 : 0.00E+00
Blast annotation: Guanylate-binding family protein
2.Location
Scaffold: PH01000046
Strand: -
| Region | Start | End |
| gene | 132064 | 142679 |
| mRNA | 132064 | 142679 |
| exon | 132064 | 133189 |
| exon | 133297 | 133374 |
| exon | 133467 | 134079 |
| exon | 134347 | 134432 |
| exon | 134550 | 134672 |
| exon | 136961 | 137146 |
| exon | 137780 | 137866 |
| exon | 138039 | 138152 |
| exon | 138313 | 138456 |
| exon | 138637 | 138702 |
| exon | 139513 | 139674 |
| exon | 141697 | 142679 |
| CDS | 132149 | 133189 |
| CDS | 133297 | 133374 |
| CDS | 133467 | 134079 |
| CDS | 134347 | 134432 |
| CDS | 134550 | 134672 |
| CDS | 136961 | 137146 |
| CDS | 137780 | 137866 |
| CDS | 138039 | 138152 |
| CDS | 138313 | 138456 |
| CDS | 138637 | 138702 |
| CDS | 139513 | 139674 |
| CDS | 141697 | 141900 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02263.18 | GBP | 68 | 283 |
| PF02841.13 | GBP_C | 321 | 510 |
| PF02841.13 | GBP_C | 547 | 666 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.