Annotation of co-expression genes

PH01000046G1870's details annotation

1.Annotation

ICBR annotation: CTP synthase, putative, expressed

Blast result AT1G30820 : 0
Blast annotation: CTP synthase family protein

2.Location

Scaffold: PH01000046
Strand: -

RegionStartEnd
gene13444461351333
mRNA13444461351333
exon13444461345202
exon13453331345426
exon13454981345578
exon13456651345713
exon13458281345913
exon13460061346233
exon13462991346337
exon13464251346514
exon13466991346761
exon13468671346945
exon13470451347091
exon13473251347375
exon13474961347579
exon13476951347759
exon13481181348235
exon13483431348393
exon13490711349157
exon13503091351333
CDS13450091345202
CDS13453331345426
CDS13454981345578
CDS13456651345713
CDS13458281345913
CDS13460061346233
CDS13462991346337
CDS13464251346514
CDS13466991346761
CDS13468671346945
CDS13470451347091
CDS13473251347375
CDS13474961347579
CDS13476951347759
CDS13481181348235
CDS13483431348393
CDS13490711349157
CDS13503091350380

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000047isomerase activity,
Brassinosteroid_biosynthesis
carbohydrate metabolic process,
carbohydrate binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06418.13CTP_synth_N24110
PF00117.27GATase230465

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003883CTP synthase activity
GO:0006221pyrimidine nucleotide biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.