Annotation of co-expression genes

PH01000046G2060's details annotation

1.Annotation

ICBR annotation: ketol-acid reductoisomerase, chloroplast precursor, putative, expressed

Blast result AT3G58610 : 0.00E+00
Blast annotation: ketol-acid reductoisomerase

2.Location

Scaffold: PH01000046
Strand: -

RegionStartEnd
gene14868481490092
mRNA14868481490092
exon14868481487340
exon14874421487597
exon14877271487894
exon14879671488106
exon14881811488298
exon14883821488609
exon14888591488999
exon14892911489356
exon14896341489726
exon14898281490092
CDS14869751487340
CDS14874421487597
CDS14877271487894
CDS14879671488106
CDS14881811488298
CDS14883821488609
CDS14888591488999
CDS14892911489356
CDS14896341489726
CDS14898281489896

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07991.11IlvN44218
PF01450.18IlvC227371
PF01450.18IlvC384458

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
299 Valine, leucine and isoleucine biosynthesisketol-acid reductoisomerase [EC:1.1.1.86]K00053
Pantothenate and CoA biosynthesisketol-acid reductoisomerase [EC:1.1.1.86]ko00770K00053

10.Gene Ontology

GO AccessionGO Annotation
GO:0004455ketol-acid reductoisomerase activity
GO:0008652cellular amino acid biosynthetic process
GO:0009082branched-chain amino acid biosynthetic process
GO:0016491oxidoreductase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662coenzyme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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