PH01000047G0210's details annotation
1.Annotation
ICBR annotation: SAC3/GANP family protein, putative, expressed
Blast result AT3G54380 : 2.90E-71
Blast annotation: SAC3/GANP/Nin1/mts3/eIF-3 p25 family
2.Location
Scaffold: PH01000047
Strand: +
| Region | Start | End |
| gene | 156857 | 163223 |
| mRNA | 156857 | 163223 |
| exon | 156857 | 157125 |
| exon | 158525 | 158743 |
| exon | 159556 | 159656 |
| exon | 160683 | 160871 |
| exon | 161545 | 161766 |
| exon | 161888 | 161973 |
| exon | 162209 | 162305 |
| exon | 162748 | 162840 |
| exon | 162949 | 163223 |
| CDS | 157053 | 157125 |
| CDS | 158525 | 158743 |
| CDS | 159556 | 159656 |
| CDS | 160683 | 160871 |
| CDS | 161545 | 161766 |
| CDS | 161888 | 161973 |
| CDS | 162209 | 162305 |
| CDS | 162748 | 162840 |
| CDS | 162949 | 163104 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03399.15 | SAC3_GANP | 99 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.