PH01000047G1080's details annotation
1.Annotation
ICBR annotation: TRAF-type zinc finger domain-containing protein 1, putative, expressed
Blast result AT1G09920 : 7.80E-55
Blast annotation: TRAF-type zinc finger-related
2.Location
Scaffold: PH01000047
Strand: -
| Region | Start | End |
| gene | 778541 | 783369 |
| mRNA | 778541 | 783369 |
| exon | 778541 | 778849 |
| exon | 779250 | 779383 |
| exon | 779458 | 779595 |
| exon | 780068 | 780136 |
| exon | 780459 | 780594 |
| exon | 781836 | 781907 |
| exon | 782874 | 783369 |
| CDS | 778687 | 778849 |
| CDS | 779250 | 779383 |
| CDS | 779458 | 779595 |
| CDS | 780068 | 780136 |
| CDS | 780459 | 780594 |
| CDS | 781836 | 781907 |
| CDS | 782874 | 782935 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001110 | Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, protein neddylation, cellular protein modification process, small protein activating enzyme activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.