PH01000047G1580's details annotation
1.Annotation
ICBR annotation: OsRhmbd8 - Putative Rhomboid homologue, expressed
Blast result AT3G07950 : 1.10E-85
Blast annotation: rhomboid protein-related
2.Location
Scaffold: PH01000047
Strand: -
| Region | Start | End |
| gene | 1138777 | 1143610 |
| mRNA | 1138777 | 1143610 |
| exon | 1138777 | 1139960 |
| exon | 1140397 | 1140528 |
| exon | 1141003 | 1141205 |
| exon | 1141303 | 1141414 |
| exon | 1141830 | 1141996 |
| exon | 1142601 | 1142661 |
| exon | 1143001 | 1143125 |
| exon | 1143420 | 1143610 |
| CDS | 1139852 | 1139960 |
| CDS | 1140397 | 1140528 |
| CDS | 1141003 | 1141205 |
| CDS | 1141303 | 1141414 |
| CDS | 1141830 | 1141996 |
| CDS | 1142601 | 1142661 |
| CDS | 1143001 | 1143125 |
| CDS | 1143420 | 1143461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08551.9 | DUF1751 | 54 | 152 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.