PH01000047G2010's details annotation
1.Annotation
ICBR annotation: OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT4G14290 : 4.30E-76
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000047
Strand: -
| Region | Start | End |
| gene | 1428245 | 1432304 |
| mRNA | 1428245 | 1432304 |
| exon | 1428245 | 1428402 |
| exon | 1428468 | 1428635 |
| exon | 1429310 | 1429354 |
| exon | 1429616 | 1429683 |
| exon | 1429767 | 1429821 |
| exon | 1429895 | 1430050 |
| exon | 1430152 | 1430250 |
| exon | 1430931 | 1431011 |
| exon | 1431465 | 1431588 |
| exon | 1431982 | 1432304 |
| CDS | 1428325 | 1428402 |
| CDS | 1428468 | 1428635 |
| CDS | 1429310 | 1429354 |
| CDS | 1429616 | 1429683 |
| CDS | 1429767 | 1429821 |
| CDS | 1429895 | 1430050 |
| CDS | 1430152 | 1430250 |
| CDS | 1430931 | 1431011 |
| CDS | 1431465 | 1431588 |
| CDS | 1431982 | 1432094 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
| coexpression network | CFinderM000297 | |
| coexpression network | CFinderM000692 | CMGC_CLK (from iTAK) ornithine_metabolic_process histone deacetylation, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.