PH01000048G0690's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT1G14560 : 4.00E-111
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01000048
Strand: +
| Region | Start | End |
| gene | 478100 | 482289 |
| mRNA | 478100 | 482289 |
| exon | 478100 | 478567 |
| exon | 479362 | 479447 |
| exon | 479536 | 479743 |
| exon | 480357 | 480486 |
| exon | 480670 | 480854 |
| exon | 480999 | 481130 |
| exon | 481873 | 482289 |
| CDS | 478394 | 478567 |
| CDS | 479362 | 479447 |
| CDS | 479536 | 479743 |
| CDS | 480357 | 480486 |
| CDS | 480670 | 480854 |
| CDS | 480999 | 481130 |
| CDS | 481873 | 481977 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 29 | 116 |
| PF00153.26 | Mito_carr | 124 | 224 |
| PF00153.26 | Mito_carr | 231 | 325 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005743 | mitochondrial inner membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.