PH01000048G1360's details annotation
1.Annotation
ICBR annotation: green ripe-like, putative, expressed
Blast result AT2G26070 : 4.00E-69
Blast annotation: Protein of unknown function (DUF778)
2.Location
Scaffold: PH01000048
Strand: +
| Region | Start | End |
| gene | 888038 | 894604 |
| mRNA | 888038 | 894604 |
| exon | 888038 | 889392 |
| exon | 889797 | 889841 |
| exon | 890311 | 890620 |
| exon | 893843 | 894604 |
| CDS | 889111 | 889392 |
| CDS | 889797 | 889841 |
| CDS | 890311 | 890620 |
| CDS | 893843 | 894369 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000290 | autophagy, Valine,_leucine_and_isoleucine_degradation Endocytosis |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05608.11 | DUF778 | 43 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.