PH01000049G0150's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT5G06950 : 2.00E-109
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000049
Strand: +
| Region | Start | End |
| gene | 88055 | 96713 |
| mRNA | 88055 | 96713 |
| exon | 88055 | 90591 |
| exon | 92822 | 92899 |
| exon | 92984 | 93043 |
| exon | 93656 | 93733 |
| exon | 93822 | 93873 |
| exon | 94205 | 94476 |
| exon | 94863 | 95093 |
| exon | 95528 | 96713 |
| CDS | 90532 | 90591 |
| CDS | 92822 | 92899 |
| CDS | 92984 | 93043 |
| CDS | 93656 | 93733 |
| CDS | 93822 | 93873 |
| CDS | 94205 | 94476 |
| CDS | 94863 | 95093 |
| CDS | 95528 | 95674 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001262 | RLK-Pelle_LRR-II (from iTAK) bZIP Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, nucleobase-containing compound kinase activity, nucleotide_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 44 | 86 |
| PF14144.5 | DOG1 | 128 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.