PH01000049G0580's details annotation
1.Annotation
ICBR annotation: bacterial transferase hexapeptide domain containing protein, expressed
Blast result AT1G19580 : 9.10E-95
Blast annotation: gamma carbonic anhydrase 1
2.Location
Scaffold: PH01000049
Strand: +
| Region | Start | End |
| gene | 332726 | 337003 |
| mRNA | 332726 | 337003 |
| exon | 332726 | 333136 |
| exon | 333337 | 333480 |
| exon | 334181 | 334306 |
| exon | 334541 | 334659 |
| exon | 335024 | 337003 |
| CDS | 333097 | 333136 |
| CDS | 333337 | 333480 |
| CDS | 334181 | 334306 |
| CDS | 334541 | 334659 |
| CDS | 335024 | 335275 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00132.23 | Hexapep | 29 | 62 |
| PF00132.23 | Hexapep | 95 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016740 | transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.