PH01000049G2330's details annotation
1.Annotation
ICBR annotation: amine oxidase, putative, expressed
Blast result AT1G62830 : 0.00E+00
Blast annotation: LSD1-like 1
2.Location
Scaffold: PH01000049
Strand: -
| Region | Start | End |
| gene | 1412177 | 1416002 |
| mRNA | 1412177 | 1416002 |
| exon | 1412177 | 1416002 |
| CDS | 1412552 | 1415047 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SWI/SNF-SWI3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04433.16 | SWIRM | 156 | 233 |
| PF01593.23 | Amino_oxidase | 262 | 694 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.