Annotation of co-expression genes

PH01000050G0250's details annotation

1.Annotation

ICBR annotation: ethylene-insensitive 3, putative, expressed

Blast result AT1G73730 : 6.00E-126
Blast annotation: ETHYLENE-INSENSITIVE3-like 3

2.Location

Scaffold: PH01000050
Strand: +

RegionStartEnd
gene135257137743
mRNA135257137743
exon135257137743
CDS135822137651

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000554EIL Transcription_Regulator(from PlantTFDB)
GT20 GlycosylTransferases
STE_STE11 (from iTAK)
PHD Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)EIL
Transcription_Regulator(from PlantTFDB)EIL

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04873.12EIN338286

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductionethylene-insensitive protein 3ko04075K14514

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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