PH01000050G0820's details annotation
1.Annotation
ICBR annotation: pirin, putative, expressed
Blast result AT1G50590 : 2.00E-112
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01000050
Strand: -
| Region | Start | End |
| gene | 559513 | 561589 |
| mRNA | 559513 | 561589 |
| exon | 559513 | 560263 |
| exon | 560387 | 560553 |
| exon | 561087 | 561154 |
| exon | 561263 | 561312 |
| exon | 561426 | 561589 |
| CDS | 559756 | 560263 |
| CDS | 560387 | 560553 |
| CDS | 561087 | 561154 |
| CDS | 561263 | 561312 |
| CDS | 561426 | 561514 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02678.15 | Pirin | 24 | 117 |
| PF05726.12 | Pirin_C | 170 | 270 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.