PH01000052G1300's details annotation
1.Annotation
ICBR annotation: cytochrome P450, putative, expressed
Blast result AT5G07990 : 7.00E-106
Blast annotation: Cytochrome P450 superfamily protein
2.Location
Scaffold: PH01000052
Strand: -
| Region | Start | End |
| gene | 906748 | 910093 |
| mRNA | 906748 | 910093 |
| exon | 906748 | 907328 |
| exon | 907363 | 907775 |
| exon | 908821 | 910093 |
| CDS | 907139 | 907328 |
| CDS | 907363 | 907775 |
| CDS | 908821 | 909654 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000903 | protein neddylation, RLK-Pelle_WAK_LRK10L-1 (from iTAK) Ubiquitin_mediated_proteolysis cellular protein modification process, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00067.21 | p450 | 34 | 274 |
| PF00067.21 | p450 | 277 | 418 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0009055 | electron carrier activity |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.