PH01000053G0650's details annotation
1.Annotation
ICBR annotation: alpha-N-arabinofuranosidase A, putative, expressed
Blast result AT3G10740 : 0.00E+00
Blast annotation: alpha-L-arabinofuranosidase 1
2.Location
Scaffold: PH01000053
Strand: -
| Region | Start | End |
| gene | 390068 | 396596 |
| mRNA | 390068 | 396596 |
| exon | 390068 | 390318 |
| exon | 390440 | 390583 |
| exon | 390667 | 390859 |
| exon | 391188 | 391291 |
| exon | 391818 | 391889 |
| exon | 392019 | 392137 |
| exon | 393175 | 393319 |
| exon | 393835 | 393887 |
| exon | 393969 | 394014 |
| exon | 394096 | 394241 |
| exon | 394345 | 394414 |
| exon | 395118 | 395265 |
| exon | 395348 | 395469 |
| exon | 395735 | 395931 |
| exon | 396165 | 396219 |
| exon | 396349 | 396596 |
| CDS | 390196 | 390318 |
| CDS | 390440 | 390583 |
| CDS | 390667 | 390859 |
| CDS | 391188 | 391291 |
| CDS | 391818 | 391889 |
| CDS | 392019 | 392137 |
| CDS | 393175 | 393319 |
| CDS | 393835 | 393887 |
| CDS | 393969 | 394014 |
| CDS | 394096 | 394241 |
| CDS | 394345 | 394414 |
| CDS | 395118 | 395265 |
| CDS | 395348 | 395469 |
| CDS | 395735 | 395931 |
| CDS | 396165 | 396219 |
| CDS | 396349 | 396525 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH51 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06964.11 | Alpha-L-AF_C | 485 | 620 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Amino sugar and nucleotide sugar metabolism | alpha-N-arabinofuranosidase [EC:3.2.1.55] | ko00520 | K01209 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.