PH01000053G0820's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G32760 : 5.20E-74
Blast annotation: -
2.Location
Scaffold: PH01000053
Strand: +
| Region | Start | End |
| gene | 483396 | 490583 |
| mRNA | 483396 | 490583 |
| exon | 483396 | 484624 |
| exon | 485121 | 485327 |
| exon | 485947 | 486127 |
| exon | 488870 | 489030 |
| exon | 489302 | 489532 |
| exon | 490252 | 490583 |
| CDS | 484394 | 484624 |
| CDS | 485121 | 485327 |
| CDS | 485947 | 486127 |
| CDS | 488870 | 489030 |
| CDS | 489302 | 489532 |
| CDS | 490252 | 490368 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10186.8 | Atg14 | 50 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010508 | positive regulation of autophagy |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.