PH01000053G1530's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT2G09990 : 1.20E-61
Blast annotation: Ribosomal protein S5 domain 2-like superfamily protein
2.Location
Scaffold: PH01000053
Strand: +
| Region | Start | End |
| gene | 923526 | 924831 |
| mRNA | 923526 | 924831 |
| exon | 923526 | 924831 |
| CDS | 923646 | 924095 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00380.18 | Ribosomal_S9 | 17 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S16e | ko03011 | K02960 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.