PH01000053G2340's details annotation
1.Annotation
ICBR annotation: SNF7 domain containing protein, putative, expressed
Blast result AT4G29160 : 8.80E-49
Blast annotation: SNF7 family protein
2.Location
Scaffold: PH01000053
Strand: +
| Region | Start | End |
| gene | 1380996 | 1386864 |
| mRNA | 1380996 | 1386864 |
| exon | 1380996 | 1381370 |
| exon | 1381653 | 1381685 |
| exon | 1384003 | 1384102 |
| exon | 1384468 | 1384553 |
| exon | 1384652 | 1384743 |
| exon | 1385576 | 1385690 |
| exon | 1385981 | 1386864 |
| CDS | 1381068 | 1381370 |
| CDS | 1381653 | 1381685 |
| CDS | 1384003 | 1384102 |
| CDS | 1384468 | 1384553 |
| CDS | 1384652 | 1384743 |
| CDS | 1385576 | 1385690 |
| CDS | 1385981 | 1386151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03357.20 | Snf7 | 113 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | charged multivesicular body protein 4 | ko04144 | K12194 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.