PH01000054G1240's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative
Blast result AT5G42450 : 3.00E-143
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000054
Strand: -
| Region | Start | End |
| gene | 745411 | 750300 |
| mRNA | 745411 | 750300 |
| exon | 745411 | 746982 |
| exon | 748185 | 748299 |
| exon | 748510 | 748587 |
| exon | 748983 | 749074 |
| exon | 749798 | 749848 |
| exon | 749958 | 750012 |
| exon | 750069 | 750300 |
| CDS | 745516 | 746982 |
| CDS | 748185 | 748299 |
| CDS | 748510 | 748587 |
| CDS | 748983 | 749074 |
| CDS | 749798 | 749848 |
| CDS | 749958 | 750012 |
| CDS | 750069 | 750157 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001808 | protein binding, Peroxisome RNA_degradation Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01196.18 | Ribosomal_L17 | 32 | 122 |
| PF13041.5 | PPR_2 | 305 | 353 |
| PF13041.5 | PPR_2 | 406 | 453 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.