Annotation of co-expression genes

PH01000054G1820's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed

Blast result AT3G53520 : 3.00E-170
Blast annotation: UDP-glucuronic acid decarboxylase 1

2.Location

Scaffold: PH01000054
Strand: -

RegionStartEnd
gene10627791069718
mRNA10627791069718
exon10627791064618
exon10646921064784
exon10654951065569
exon10656751065758
exon10668311066956
exon10680161069718
CDS10644301064618
CDS10646921064784
CDS10654951065569
CDS10656751065758
CDS10668311066956
CDS10680161068507

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000850RLK-Pelle_DLSV (from iTAK)
coexpression networkCFinderM001328GT32 GlycosylTransferases
Golgi stack,
CMGC_SRPK (from iTAK)
coexpression networkCFinderM001373GTnc GlycosylTransferases
phospholipid transport,
cellular metabolic process,
cation transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16363.4GDP_Man_Dehyd102394

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.