PH01000054G1900's details annotation
1.Annotation
ICBR annotation: hydrolase, alpha/beta fold family domain containing protein, expressed
Blast result AT2G39420 : 1.30E-72
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000054
Strand: -
| Region | Start | End |
| gene | 1115253 | 1117812 |
| mRNA | 1115253 | 1117812 |
| exon | 1115253 | 1116130 |
| exon | 1116270 | 1116368 |
| exon | 1116524 | 1116661 |
| exon | 1116838 | 1116986 |
| exon | 1117061 | 1117812 |
| CDS | 1115891 | 1116130 |
| CDS | 1116270 | 1116368 |
| CDS | 1116524 | 1116661 |
| CDS | 1116838 | 1116986 |
| CDS | 1117061 | 1117256 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12146.7 | Hydrolase_4 | 17 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.