PH01000055G1320's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT5G10030 : 2.00E-76
Blast annotation: TGACG motif-binding factor 4
2.Location
Scaffold: PH01000055
Strand: +
| Region | Start | End |
| gene | 921370 | 926226 |
| mRNA | 921370 | 926226 |
| exon | 921370 | 923152 |
| exon | 923242 | 923316 |
| exon | 923492 | 923551 |
| exon | 923636 | 923713 |
| exon | 923801 | 923864 |
| exon | 924002 | 924273 |
| exon | 924372 | 924599 |
| exon | 924909 | 924989 |
| exon | 925625 | 926226 |
| CDS | 923030 | 923152 |
| CDS | 923242 | 923316 |
| CDS | 923492 | 923551 |
| CDS | 923636 | 923713 |
| CDS | 923801 | 923864 |
| CDS | 924002 | 924273 |
| CDS | 924372 | 924599 |
| CDS | 924909 | 924989 |
| CDS | 925625 | 925669 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 65 | 105 |
| PF14144.5 | DOG1 | 153 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.