PH01000055G2000's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase subunit D 1, putative, expressed
Blast result AT3G58730 : 7.50E-38
Blast annotation: vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)
2.Location
Scaffold: PH01000055
Strand: +
| Region | Start | End |
| gene | 1368991 | 1370672 |
| mRNA | 1368991 | 1370672 |
| exon | 1368991 | 1369555 |
| exon | 1369629 | 1370672 |
| CDS | 1369271 | 1369555 |
| CDS | 1369629 | 1370138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001278 | protein_kinase_binding ATPase activity, coupled to transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01813.16 | ATP-synt_D | 17 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.