Annotation of co-expression genes

PH01000055G2000's details annotation

1.Annotation

ICBR annotation: vacuolar ATP synthase subunit D 1, putative, expressed

Blast result AT3G58730 : 7.50E-38
Blast annotation: vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)

2.Location

Scaffold: PH01000055
Strand: +

RegionStartEnd
gene13689911370672
mRNA13689911370672
exon13689911369555
exon13696291370672
CDS13692711369555
CDS13696291370138

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000624proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
HB-other Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001278protein_kinase_binding
ATPase activity, coupled to transmembrane movement of substances,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01813.16ATP-synt_D1799

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0042626ATPase activity, coupled to transmembrane movement of substances

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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