PH01000055G2020's details annotation
1.Annotation
ICBR annotation: amidase, putative, expressed
Blast result AT3G25660 : 1.00E-162
Blast annotation: Amidase family protein
2.Location
Scaffold: PH01000055
Strand: -
| Region | Start | End |
| gene | 1381581 | 1388381 |
| mRNA | 1381581 | 1388381 |
| exon | 1381581 | 1381764 |
| exon | 1381877 | 1381954 |
| exon | 1382719 | 1382794 |
| exon | 1382880 | 1382974 |
| exon | 1383099 | 1383278 |
| exon | 1383815 | 1384126 |
| exon | 1384486 | 1388381 |
| CDS | 1381621 | 1381764 |
| CDS | 1381877 | 1381954 |
| CDS | 1382719 | 1382794 |
| CDS | 1382880 | 1382974 |
| CDS | 1383099 | 1383278 |
| CDS | 1383815 | 1384126 |
| CDS | 1384486 | 1385028 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000548 | superoxide dismutase activity, superoxide metabolic process, Peroxisome Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, |
| coexpression network | CFinderM000549 | Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, |
| coexpression network | CFinderM000928 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Aminoacyl-tRNA_biosynthesis Jumonji Transcription_Regulator(from iTAK) translation, |
| coexpression network | CFinderM001151 | Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Jumonji Transcription_Regulator(from iTAK) translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01425.20 | Amidase | 64 | 463 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A[EC:6.3.5.6;EC:6.3.5.7] | ko00970 | K02433 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006412 | translation |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.